Package index
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prepare_markov_data() - Prepare Markov Data for Proportional Odds Modeling
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orm_markov() - Fit an rms Markov Model
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vglm_markov() - Fit a VGAM Markov Model
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blrm_markov() - Fit an rmsb Markov Model
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sops() - Calculate Individual State Occupation Probabilities
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avg_sops() - Calculate Averaged State Occupation Probabilities (Marginal Effects)
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avg_time() - Calculate Average Total Time in States
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avg_comparisons() - Average Comparisons From Markov State Occupancy Probabilities
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inferences() - Inference for State Occupation Probabilities and Time Summaries
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time_in_state() - Compute Total Time in Target State(s)
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interpolate_sops() - Interpolate SOPs from Visit Time to Real Time
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vcov(<markov_sops>)vcov(<markov_avg_sops>)vcov(<markov_avg_comparisons>)vcov(<markov_avg_time>) - Analytical Covariance for SOPs, Average Times, and Comparisons
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mostr.delta_max_bytes - Analytical Delta-Method Memory Limit
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soprob_markov() - Calculate State Occupancy Probabilities
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plot_sops() - Plot State Occupancy Probabilities Over Time
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plot_comparisons() - Plot Average Comparisons
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plot_time() - Plot Average Time in States
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plot_transitions() - Plot Empirical or Model-Based Transition Proportions
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plot_correlation() - Plot Empirical or Model-Implied Correlations Over Time
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plot_variogram() - Plot an Empirical or Model-Implied Correlation Variogram
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plot_lp_difference() - Plot Treatment Differences in the Linear Predictor
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compare_se_orm_vglm() - Compare Standard Errors from orm and vglm
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sim_markov() - Simulate ordinal patient trajectories from a Markov model
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actt1_preset - ACTT-1 preset for sim_markov()
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actt2_preset - ACTT-2 preset for sim_markov()
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violet_preset - VIOLET preset for sim_markov()
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violet_baseline - Starting states, ages, and SOFA scores of the VIOLET patients
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bootstrap_model_coefs() - Bootstrap confidence intervals for model coefficients
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get_draws() - Extract Individual Draws from Inference Objects
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get_effective_coefs() - Calculate Effective Coefficients for Fast Prediction
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get_vcov_robust() - Get Robust Variance-Covariance Matrix
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set_coef() - Set Coefficients for Model Objects
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robcov_vglm() - Robust (Sandwich) Covariance Matrix Estimation for vglm Objects
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coef(<robcov_vglm>) - Extract Coefficients from robcov_vglm Objects
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vcov(<robcov_vglm>) - Extract Variance-Covariance Matrix from robcov_vglm Objects
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print(<robcov_vglm>) - Print Method for robcov_vglm Objects
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summary(<robcov_vglm>) - Summary Method for robcov_vglm Objects